Package: sprex 1.4.2
sprex: Species Richness and Extrapolation
Functions for calculating species richness for rarefaction and extrapolation, primarily non-parametric species richness such as jackknife, Chao1, and ACE. Also available are functions for plotting species richness and extrapolation curves, and computing standard diversity and entropy indices.
Authors:
sprex_1.4.2.tar.gz
sprex_1.4.2.zip(r-4.5)sprex_1.4.2.zip(r-4.4)sprex_1.4.2.zip(r-4.3)
sprex_1.4.2.tgz(r-4.4-any)sprex_1.4.2.tgz(r-4.3-any)
sprex_1.4.2.tar.gz(r-4.5-noble)sprex_1.4.2.tar.gz(r-4.4-noble)
sprex_1.4.2.tgz(r-4.4-emscripten)sprex_1.4.2.tgz(r-4.3-emscripten)
sprex.pdf |sprex.html✨
sprex/json (API)
| # Install 'sprex' in R: |
| install.packages('sprex', repos = c('https://ericarcher.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ericarcher/sprex/issues
- osa.old.growth - Osa beetle species counts
- osa.second.growth - Osa beetle species counts
Last updated 1 years agofrom:e91b438654. Checks:OK: 1 ERROR: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 05 2024 |
| R-4.5-win | ERROR | Nov 05 2024 |
| R-4.5-linux | ERROR | Nov 05 2024 |
| R-4.4-win | ERROR | Nov 05 2024 |
| R-4.4-mac | ERROR | Nov 05 2024 |
| R-4.3-win | ERROR | Nov 05 2024 |
| R-4.3-mac | ERROR | Nov 05 2024 |
Exports:.s.ind.n.mACEbootstrap.assemblageChao1Clenchdiscovery.curvediversityexpand.freqsexpected.num.speciesf.statsiChao1jack1jack2num.samples.requiredrarefaction.overlapsample.to.species.freqspecies.to.sample.freqSwor1
Dependencies:abindclassclassIntcliclueclustercodacolorspacecpp11DBIdeldirdplyre1071fansifarverfBasicsgenericsggplot2ggrepelgluegssgtableHDIntervaligraphisobandKernSmoothkknnlabelinglatticelifecyclemagrittrMASSMatrixmgcvmodeestmunsellnlmepillarpkgconfigpolyclipproxypurrrR6RColorBrewerRcpprlangrmutilrpartrunjagss2scalessfspatialspatstat.dataspatstat.geomspatstat.univarspatstat.utilsstablestablediststatipstringistringrswfscMisctibbletidyrtidyselecttimeDatetimeSeriesunitsutf8vctrsviridisLitewithrwk
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Calculate species richness and extrapolation metrics | sprex-package sprex |
| Number of Unobserved Species | ACE Chao1 Clench f0 iChao1 jack1 jack2 Swor1 |
| Bootstrap Assemblage of Species | bootstrap.assemblage |
| Discovery Curve | discovery.curve |
| Diversity Indices | diversity |
| Expand Frequency Matrix | expand.freqs |
| Expected Number of Species | expected.num.species |
| Frequency Vector Statistics | f.stats |
| Number of Samples Required | num.samples.required |
| Osa beetle species counts | osa.old.growth osa.second.growth |
| Rarefaction Overlap | rarefaction.overlap |
| Create Vector of Species Frequencies | sample.to.species.freq |
| Create Vector of Sample Frequencies | species.to.sample.freq |
